{"id":15927,"date":"2020-04-27T18:13:54","date_gmt":"2020-04-27T17:13:54","guid":{"rendered":"https:\/\/www.datanovia.com\/en\/?post_type=dt_lessons&#038;p=15927"},"modified":"2020-04-27T18:13:54","modified_gmt":"2020-04-27T17:13:54","slug":"highchart-interactive-advanced-graphics-in-r","status":"publish","type":"dt_lessons","link":"https:\/\/www.datanovia.com\/en\/lessons\/highchart-interactive-advanced-graphics-in-r\/","title":{"rendered":"Highchart Interactive Advanced Graphics in R"},"content":{"rendered":"<div id=\"rdoc\">\n<p>You will learn how to use the highcharter R package for creating <strong>interactive plots<\/strong> from the results of advanced statistical methods, such as:<\/p>\n<ul>\n<li>Network analysis<\/li>\n<li>Survival models<\/li>\n<li>Principal component analysis<\/li>\n<li>Correlation matrix<\/li>\n<li>Distance matrix<\/li>\n<\/ul>\n<p>Contents:<\/p>\n<div id=\"TOC\">\n<ul>\n<li><a href=\"#prerequisites\">Prerequisites<\/a><\/li>\n<li><a href=\"#network-analysis\">Network analysis<\/a><\/li>\n<li><a href=\"#survival-models\">Survival models<\/a><\/li>\n<li><a href=\"#principal-component-analysis\">Principal component analysis<\/a><\/li>\n<li><a href=\"#distance-matrix\">Distance matrix<\/a><\/li>\n<li><a href=\"#correlation-matrix\">Correlation matrix<\/a><\/li>\n<\/ul>\n<\/div>\n<div id=\"prerequisites\" class=\"section level2\">\n<h2>Prerequisites<\/h2>\n<pre class=\"r\"><code># Load required R packages\r\nlibrary(tidyverse)\r\nlibrary(highcharter) \r\n\r\n# Set highcharter options\r\noptions(highcharter.theme = hc_theme_smpl(tooltip = list(valueDecimals = 2)))<\/code><\/pre>\n<\/div>\n<div id=\"network-analysis\" class=\"section level2\">\n<h2>Network analysis<\/h2>\n<pre class=\"r\"><code>library(igraph)\r\nN &lt;- 40\r\n\r\nnet &lt;- sample_gnp(N, p = 2 \/ N)\r\nwc &lt;- cluster_walktrap(net)\r\n\r\nV(net)$label &lt;- seq(N)\r\nV(net)$name &lt;- paste(\"I'm #\", seq(N))\r\nV(net)$page_rank &lt;- round(page.rank(net)$vector, 2)\r\nV(net)$betweenness &lt;- round(betweenness(net), 2)\r\nV(net)$degree &lt;- degree(net)\r\nV(net)$size &lt;- V(net)$degree\r\nV(net)$comm &lt;- membership(wc)\r\nV(net)$color &lt;- colorize(membership(wc))\r\n\r\nhc &lt;- hchart(net, layout = layout_with_fr)<\/code><\/pre>\n<pre class=\"r\"><code>hc<\/code><\/pre>\n<p><iframe width=\"95%\" height=\"450\" src=\"https:\/\/www.datanovia.com\/en\/wp-content\/uploads\/dn-tutorials\/highcharter\/figures\/028-highcharter-advanced-graphics-igraph.html\" frameborder=\"2\"><br \/>\n<\/iframe><\/p>\n<\/div>\n<div id=\"survival-models\" class=\"section level2\">\n<h2>Survival models<\/h2>\n<pre class=\"r\"><code>library(survival)\r\n\r\ndata(lung)\r\nlung &lt;- mutate(lung, sex = ifelse(sex == 1, \"Male\", \"Female\"))\r\nfit &lt;- survfit(Surv(time, status) ~ sex, data = lung) \r\n\r\nhc &lt;- hchart(fit, ranges = TRUE)<\/code><\/pre>\n<pre class=\"r\"><code>hc<\/code><\/pre>\n<p><iframe width=\"95%\" height=\"450\" src=\"https:\/\/www.datanovia.com\/en\/wp-content\/uploads\/dn-tutorials\/highcharter\/figures\/028-highcharter-advanced-graphics-survival-model.html\" frameborder=\"2\"><br \/>\n<\/iframe><\/p>\n<\/div>\n<div id=\"principal-component-analysis\" class=\"section level2\">\n<h2>Principal component analysis<\/h2>\n<pre class=\"r\"><code>hc &lt;- hchart(princomp(USArrests, cor = TRUE))<\/code><\/pre>\n<pre class=\"r\"><code>hc<\/code><\/pre>\n<p><iframe width=\"95%\" height=\"450\" src=\"https:\/\/www.datanovia.com\/en\/wp-content\/uploads\/dn-tutorials\/highcharter\/figures\/028-highcharter-advanced-graphics-principal-component-analysis.html\" frameborder=\"2\"><br \/>\n<\/iframe><\/p>\n<\/div>\n<div id=\"distance-matrix\" class=\"section level2\">\n<h2>Distance matrix<\/h2>\n<pre class=\"r\"><code>mtcars2 &lt;- mtcars[1:20, ]\r\nx &lt;- dist(mtcars2)\r\nhc &lt;- hchart(x)<\/code><\/pre>\n<pre class=\"r\"><code>hc<\/code><\/pre>\n<p><iframe width=\"95%\" height=\"450\" src=\"https:\/\/www.datanovia.com\/en\/wp-content\/uploads\/dn-tutorials\/highcharter\/figures\/028-highcharter-advanced-graphics-distance-matrix.html\" frameborder=\"2\"><br \/>\n<\/iframe><\/p>\n<\/div>\n<div id=\"correlation-matrix\" class=\"section level2\">\n<h2>Correlation matrix<\/h2>\n<pre class=\"r\"><code>hc &lt;- hchart(cor(mtcars))<\/code><\/pre>\n<pre class=\"r\"><code>hc<\/code><\/pre>\n<p><iframe width=\"95%\" height=\"450\" src=\"https:\/\/www.datanovia.com\/en\/wp-content\/uploads\/dn-tutorials\/highcharter\/figures\/028-highcharter-advanced-graphics-correlation-matrix.html\" frameborder=\"2\"><br \/>\n<\/iframe><\/p>\n<\/div>\n<\/div>\n<p><!--end rdoc--><\/p>\n","protected":false},"excerpt":{"rendered":"<p>You will learn how to use the highcharter R package for creating interactive plots from the results of advanced statistical methods, such as: Network analysis, Survival models, Principal component analysis, Correlation matrix and Distance matrix<\/p>\n","protected":false},"author":1,"featured_media":9115,"parent":0,"menu_order":0,"comment_status":"open","ping_status":"closed","template":"","class_list":["post-15927","dt_lessons","type-dt_lessons","status-publish","has-post-thumbnail","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v25.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Highchart Interactive Advanced Graphics in R - Datanovia<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.datanovia.com\/en\/lessons\/highchart-interactive-advanced-graphics-in-r\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Highchart Interactive Advanced Graphics in R - Datanovia\" \/>\n<meta property=\"og:description\" content=\"You will learn how to use the highcharter R 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